The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
Identifieur interne : 000882 ( Main/Exploration ); précédent : 000881; suivant : 000883The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
Auteurs : Sateesh Kagale [Canada] ; Chushin Koh [Canada] ; John Nixon [Canada] ; Venkatesh Bollina [Canada] ; Wayne E. Clarke [Canada] ; Reetu Tuteja [Irlande (pays)] ; Charles Spillane [Irlande (pays)] ; Stephen J. Robinson [Canada] ; Matthew G. Links [Canada] ; Carling Clarke [Canada] ; Erin E. Higgins [Canada] ; Terry Huebert [Canada] ; Andrew G. Sharpe [Canada] ; Isobel A. P. Parkin [Canada]Source :
- Nature Communications [ 2041-1723 ] ; 2014.
Abstract
Url:
DOI: 10.1038/ncomms4706
PubMed: 24759634
PubMed Central: 4015329
Affiliations:
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Robinson</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Links, Matthew G" sort="Links, Matthew G" uniqKey="Links M" first="Matthew G." last="Links">Matthew G. Links</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Clarke, Carling" sort="Clarke, Carling" uniqKey="Clarke C" first="Carling" last="Clarke">Carling Clarke</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>National Research Council Canada</institution>, 110 Gymnasium Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0W9</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Higgins, Erin E" sort="Higgins, Erin E" uniqKey="Higgins E" first="Erin E." last="Higgins">Erin E. Higgins</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Huebert, Terry" sort="Huebert, Terry" uniqKey="Huebert T" first="Terry" last="Huebert">Terry Huebert</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sharpe, Andrew G" sort="Sharpe, Andrew G" uniqKey="Sharpe A" first="Andrew G." last="Sharpe">Andrew G. Sharpe</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>National Research Council Canada</institution>, 110 Gymnasium Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0W9</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Parkin, Isobel A P" sort="Parkin, Isobel A P" uniqKey="Parkin I" first="Isobel A. P." last="Parkin">Isobel A. P. Parkin</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24759634</idno><idno type="pmc">4015329</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015329</idno><idno type="RBID">PMC:4015329</idno><idno type="doi">10.1038/ncomms4706</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000002</idno><idno type="wicri:Area/Pmc/Curation">000002</idno><idno type="wicri:Area/Pmc/Checkpoint">000673</idno><idno type="wicri:Area/Ncbi/Merge">001674</idno><idno type="wicri:Area/Ncbi/Curation">001674</idno><idno type="wicri:Area/Ncbi/Checkpoint">001674</idno><idno type="wicri:Area/Main/Merge">000882</idno><idno type="wicri:Area/Main/Curation">000882</idno><idno type="wicri:Area/Main/Exploration">000882</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The emerging biofuel crop <italic>Camelina sativa</italic> retains a highly undifferentiated hexaploid genome structure</title><author><name sortKey="Kagale, Sateesh" sort="Kagale, Sateesh" uniqKey="Kagale S" first="Sateesh" last="Kagale">Sateesh Kagale</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="a2"><institution>National Research Council Canada</institution>, 110 Gymnasium Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0W9</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Koh, Chushin" sort="Koh, Chushin" uniqKey="Koh C" first="Chushin" last="Koh">Chushin Koh</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>National Research Council Canada</institution>, 110 Gymnasium Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0W9</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Nixon, John" sort="Nixon, John" uniqKey="Nixon J" first="John" last="Nixon">John Nixon</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Bollina, Venkatesh" sort="Bollina, Venkatesh" uniqKey="Bollina V" first="Venkatesh" last="Bollina">Venkatesh Bollina</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Clarke, Wayne E" sort="Clarke, Wayne E" uniqKey="Clarke W" first="Wayne E." last="Clarke">Wayne E. Clarke</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Tuteja, Reetu" sort="Tuteja, Reetu" uniqKey="Tuteja R" first="Reetu" last="Tuteja">Reetu Tuteja</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>Plant and AgriBiosciences Centre (PABC), School of Natural Sciences, National University of Ireland Galway</institution>, Galway,<country>Ireland</country></nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Spillane, Charles" sort="Spillane, Charles" uniqKey="Spillane C" first="Charles" last="Spillane">Charles Spillane</name><affiliation wicri:level="1"><nlm:aff id="a3"><institution>Plant and AgriBiosciences Centre (PABC), School of Natural Sciences, National University of Ireland Galway</institution>, Galway,<country>Ireland</country></nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Robinson, Stephen J" sort="Robinson, Stephen J" uniqKey="Robinson S" first="Stephen J." last="Robinson">Stephen J. Robinson</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Links, Matthew G" sort="Links, Matthew G" uniqKey="Links M" first="Matthew G." last="Links">Matthew G. Links</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Clarke, Carling" sort="Clarke, Carling" uniqKey="Clarke C" first="Carling" last="Clarke">Carling Clarke</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>National Research Council Canada</institution>, 110 Gymnasium Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0W9</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Higgins, Erin E" sort="Higgins, Erin E" uniqKey="Higgins E" first="Erin E." last="Higgins">Erin E. Higgins</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Huebert, Terry" sort="Huebert, Terry" uniqKey="Huebert T" first="Terry" last="Huebert">Terry Huebert</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sharpe, Andrew G" sort="Sharpe, Andrew G" uniqKey="Sharpe A" first="Andrew G." last="Sharpe">Andrew G. Sharpe</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>National Research Council Canada</institution>, 110 Gymnasium Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0W9</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Parkin, Isobel A P" sort="Parkin, Isobel A P" uniqKey="Parkin I" first="Isobel A. P." last="Parkin">Isobel A. P. Parkin</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Saskatoon Research Centre, Agriculture and Agri-Food Canada</institution>, 107 Science Place, Saskatoon, Saskatchewan,<country>Canada</country> S7N 0X2</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Nature Communications</title><idno type="eISSN">2041-1723</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Camelina sativa</italic> is an oilseed with desirable agronomic and oil-quality attributes for a viable industrial oil platform crop. Here we generate the first chromosome-scale high-quality reference genome sequence for <italic>C. sativa</italic> and annotated 89,418 protein-coding genes, representing a whole-genome triplication event relative to the crucifer model <italic>Arabidopsis thaliana</italic>. <italic>C. sativa</italic> represents the first crop species to be sequenced from lineage I of the Brassicaceae. The well-preserved hexaploid genome structure of <italic>C. sativa</italic> surprisingly mirrors those of economically important amphidiploid <italic>Brassica</italic> crop species from lineage II as well as wheat and cotton. The three genomes of <italic>C. sativa</italic> show no evidence of fractionation bias and limited expression-level bias, both characteristics commonly associated with polyploid evolution. The highly undifferentiated polyploid genome of <italic>C. sativa</italic> presents significant consequences for breeding and genetic manipulation of this industrial oil crop.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Gehringer, A" uniqKey="Gehringer A">A. Gehringer</name></author><author><name sortKey="Friedt, W" uniqKey="Friedt W">W. Friedt</name></author><author><name sortKey="Luhs, W" uniqKey="Luhs W">W. Luhs</name></author><author><name sortKey="Snowdon, R J" uniqKey="Snowdon R">R. J. Snowdon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moser, B R" uniqKey="Moser B">B. R. Moser</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Seguin Swartz, G" uniqKey="Seguin Swartz G">G. Séguin-Swartz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Beilstein, M A" uniqKey="Beilstein M">M. A. 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Kawazu</name></author><author><name sortKey="Koyama, H" uniqKey="Koyama H">H. Koyama</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Trapnell, C" uniqKey="Trapnell C">C. Trapnell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grabherr, M G" uniqKey="Grabherr M">M. G. Grabherr</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Montgomery, D C" uniqKey="Montgomery D">D. C. Montgomery</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Canada</li><li>Irlande (pays)</li></country></list><tree><country name="Canada"><noRegion><name sortKey="Kagale, Sateesh" sort="Kagale, Sateesh" uniqKey="Kagale S" first="Sateesh" last="Kagale">Sateesh Kagale</name></noRegion><name sortKey="Bollina, Venkatesh" sort="Bollina, Venkatesh" uniqKey="Bollina V" first="Venkatesh" last="Bollina">Venkatesh Bollina</name><name sortKey="Clarke, Carling" sort="Clarke, Carling" uniqKey="Clarke C" first="Carling" last="Clarke">Carling Clarke</name><name sortKey="Clarke, Wayne E" sort="Clarke, Wayne E" uniqKey="Clarke W" first="Wayne E." last="Clarke">Wayne E. Clarke</name><name sortKey="Higgins, Erin E" sort="Higgins, Erin E" uniqKey="Higgins E" first="Erin E." last="Higgins">Erin E. Higgins</name><name sortKey="Huebert, Terry" sort="Huebert, Terry" uniqKey="Huebert T" first="Terry" last="Huebert">Terry Huebert</name><name sortKey="Kagale, Sateesh" sort="Kagale, Sateesh" uniqKey="Kagale S" first="Sateesh" last="Kagale">Sateesh Kagale</name><name sortKey="Koh, Chushin" sort="Koh, Chushin" uniqKey="Koh C" first="Chushin" last="Koh">Chushin Koh</name><name sortKey="Links, Matthew G" sort="Links, Matthew G" uniqKey="Links M" first="Matthew G." last="Links">Matthew G. Links</name><name sortKey="Nixon, John" sort="Nixon, John" uniqKey="Nixon J" first="John" last="Nixon">John Nixon</name><name sortKey="Parkin, Isobel A P" sort="Parkin, Isobel A P" uniqKey="Parkin I" first="Isobel A. P." last="Parkin">Isobel A. P. Parkin</name><name sortKey="Robinson, Stephen J" sort="Robinson, Stephen J" uniqKey="Robinson S" first="Stephen J." last="Robinson">Stephen J. Robinson</name><name sortKey="Sharpe, Andrew G" sort="Sharpe, Andrew G" uniqKey="Sharpe A" first="Andrew G." last="Sharpe">Andrew G. Sharpe</name></country><country name="Irlande (pays)"><noRegion><name sortKey="Tuteja, Reetu" sort="Tuteja, Reetu" uniqKey="Tuteja R" first="Reetu" last="Tuteja">Reetu Tuteja</name></noRegion><name sortKey="Spillane, Charles" sort="Spillane, Charles" uniqKey="Spillane C" first="Charles" last="Spillane">Charles Spillane</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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